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SRX11960252: RNA-Seq of QS9
1 ILLUMINA (Illumina HiSeq 4000) run: 28.1M spots, 8.5G bases, 2.4Gb downloads

Design: cell culture
Submitted by: SUN YAT-SEN UNIVERSITY
Study: Complex bilateral interactions determine the fate of microplastics and soil protists: implications from a soil amoeba
show Abstracthide Abstract
In this study, we investigated how nano- and micro-plastics interacted with a soil amoeba Dictyostelium discoideum. The results showed that environmental concentrations of nano- and micro-plastics could negatively affect the soil amoeba's fitness and development. D. discoideum ingested both nano- and micro-plastics through phagocytosis but packed and excreted them during slug migration, which may accelerate their biodegradation. Also, nano- and micro-plastic exposure disrupted the nutrient and energy metabolisms of D. discoideum and affected the expression of key genes (e.g., cf45-1, dcsA, aprA, dymB, gefB) related to morphogenesis and phagocytosis.
Sample:
SAMN21031878 • SRS9969593 • All experiments • All runs
Library:
Name: Microbe_QS9_MP1000_1
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: Oligo-dT
Layout: PAIRED
Runs: 1 run, 28.1M spots, 8.5G bases, 2.4Gb
Run# of Spots# of BasesSizePublished
SRR1566337928,075,8418.5G2.4Gb2023-01-29

ID:
15878414

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